eeglab open-source matlab r 2015a toolbox Search Results


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MathWorks Inc segthresh
A) Z-projections of <t>SegThresh-segmented</t> Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).
Segthresh, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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A) Z-projections of <t>SegThresh-segmented</t> Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).
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A) Z-projections of <t>SegThresh-segmented</t> Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).
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Intan Technologies Llc system software (version 1.5
A) Z-projections of <t>SegThresh-segmented</t> Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).
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Vidrio Technologies scanimage 3.8
A) Z-projections of <t>SegThresh-segmented</t> Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).
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A) Z-projections of SegThresh-segmented Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).

Journal: The Journal of comparative neurology

Article Title: Anatomy and spatial organization of Müller glia in mouse retina

doi: 10.1002/cne.24153

Figure Lengend Snippet: A) Z-projections of SegThresh-segmented Brainbow-labeled MG in IPL and OPL. Yellow, cell borders; gray, cell territories. B) The regions of A where two or more cells overlap are indicated in orange. C) Same fields of view as A, except that each cell has been flipped about its horizontal axis. D) Regions of overlap in flipped image. When cells are flipped, retinal coverage is decreased (more of the field of view is white in C than A), and overlap is increased (more orange in D than B), suggesting that the specific shapes of arbors relative to their neighbors is not random. E) Quantification of arbor overlap for interacting pairs of cells in the IPL and OPL. F,G) Pairwise comparison of arbor overlap for real and flipped neighboring cells (example pairs shown in F). Flipped territories demonstrate significantly more overlap than real territories (G). Colored squares, individual cell pairs; black circle, group mean. *IPL p=0.023; *OPL p=0.008 (see Results for statistical details). Scale bar: 10 µm (A–D).

Article Snippet: The above algorithm was incorporated in an open-source software named “SegThresh” with an intuitive graphical user interface using MATLAB 2015a.

Techniques: Labeling, Comparison

KEY  RESOURCE  TABLE

Journal: Neuron

Article Title: Neural mechanisms of sustained attention are rhythmic

doi: 10.1016/j.neuron.2018.07.032

Figure Lengend Snippet: KEY RESOURCE TABLE

Article Snippet: Subsequently, we combined z-scores across observers and then turned the averaged z-scores into a probability using the cumulative distribution function φ according to the following formula: p combined = 1 − φ ( ∑ i = 1 : N φ − 1 1 − p i N ) table ft1 table-wrap mode="anchored" t5 REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms Presentation Neurobehavioral Systems Inc. https://www.neurobs.com EPrime Psychology Software Tools Inc. https://pstnet.com/ MATLAB 2015a MathWorks Inc. RRID: SCR_001622 EEGLAB 13_4_4b ( Delorme and Makeig, 2004 ) https://sccn.ucsd.edu/eeglab/index.php FieldTrip 20170912 ( Oostenveld et al., 2011 ) http://www.fieldtriptoolbox.org/ CircStat 2012 ( Berens, 2009 ) https://philippberens.wordpress.com/code/circstats/ IRASA ( Wen and Liu, 2016 ) https://purr.purdue.edu/publications/1987/1 SPM8 ( Penny et al., 2011 ) http://www.fil.ion.ucl.ac.uk/spm/ Freesurfer 5.3.0 ( Dale et al., 1999 ) https://surfer.nmr.mgh.harvard.edu/ ibootci Andrew Penn; MATLAB central https://mathworks.com/matlabcentral/fileexchange/52741-ibootci Open in a separate window KEY RESOURCE TABLE We furthermore used Pearson’s correlation coefficient to delineate functional networks ( / ).

Techniques: Software